did you byte swap them?
probably worth asking what you was burning to the rom.3.1?
For the A3000 I used the Arexx script to build the 1mb rom and answered Yes to the question to byte swap. Just like the guide says to build the A1200 rom and make the HI and LO bin. Placed then in the correct rom sockets. Original roms work when I place them back.
For the A600 I tried several things (making me to erase 4 Eproms soon

)... but the byte swap option is only explained for 1 mb roms split into 2 eproms by the Arexx script. And can't find the option to byte-swap on the Genius Software, maybe it has something to do with encryption as I understand, but don't know (or can find) if the byte swap option is in the software...?
The rom is just a basic A3000 3.1 rom with the updated BB2 libraries from first post, only some special for the A3000 /ECS like the scsi.device, graphics.library (ECS) and the A3000 bonus file and others from DonAdan. Nothing real special actually...
And they (both A600 and A3000) work in WinUAE, but not when I burn them. That is why I think I do something wrong with the burning part...
Edit: for the A3000 I select both 2 bin files (normal and extended) and select the A3000 Chipset Extra option to get the KS 3.9 screen.... The extended rom only contains the workbench.library 1.32 and the Rom Header file, all other files are in the normal rom. I have no PPC so the other files in first post are not needed as I understand...
Edit2: I read I need a hack to use 1mb rom in the A3000? Romy hack from Cosmos?
Thanks for the help @roy_bates (also from my Amiga 1200/Bliz030 with her new 64mb Edo

)
Update:
Took the non-byteswapped 512k bin I made for the A600 and used the utility Swab (
http://xe-emulator.com/index.php?m=download) to byteswap the file, burned it and the A600 shows the KS 3.9 screen

So Swab can do the byteswap without splitting
Sadly I think I did something wrong building the rom as the mouse won't work and by this the early startup-screen doesn't come up, but I'm gertting somewhere !!
For the A3000 I will follow the A4000 guide, I think that will do the trick for that one
Another update: got the A600 512K KS working after ripping the rom again and skip the input/keyboard patch and keeping the old scsi.device... with the new scsi.device the A600 won't boot...